Prrophetic r包下载
Webb3 juli 2024 · 下载之后进行安装,在 R 控制台运行命令: install.packages("pRRophetic_0.5.tar.gz", repos = NULL, dependencies = TRUE) 测试 安装好之后我们需要测试下包能不能正常使用,这里就跟着文档做个几步看看。 先载入包和进行设置: > library(pRRophetic) Warning message: replacing previous import ‘car::Anova’ by … Webb10 mars 2024 · R: The R Project for Statistical Computing The R Project for Statistical Computing Getting Started R is a free software environment for statistical computing and graphics. It compiles and runs on a wide variety of UNIX platforms, Windows and MacOS. To download R , please choose your preferred CRAN mirror.
Prrophetic r包下载
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WebbBioconductor version: Release (3.16) The sva package contains functions for removing batch effects and other unwanted variation in high-throughput experiment. Specifically, the sva package contains functions for the identifying and building surrogate variables for high-dimensional data sets. Surrogate variables are covariates constructed ... Webb17 sep. 2014 · The pRRophetic package can be used for phenotype prediction from gene expression microarray data. The novel use case is prediction of clinical chemotherapeutic response using only baseline tumor gene expression data.
Webb26 jan. 2024 · 用于预测皮肤黑色素瘤预后的新型焦亡相关 lncRNA 特征. 黑色素瘤是一种高度恶性的皮肤肿瘤,侵袭性强,预后差。. 1美国国家癌症研究所估计,2024 年美国将有大约 100,000 例新的黑色素瘤病例和 6850 例死亡。. 2黑色素瘤的危险因素包括浅肤色、紫外 … Webb12 maj 2024 · pRRophetic r package first commit 9 years ago README Update README 6 years ago vignetteOutline.pdf r package first commit 9 years ago README A .tar.gz file and details of how to download and install this package are available from: http://genemed.uchicago.edu/~pgeeleher/pRRophetic/ Note, this repository is here for …
Webb28 juli 2024 · 使用R包pRRophetic进行预测,其采用ridge回归估计样本的IC50,基于GDSC训练集通过10次交叉验证评估预测精度。 (6)统计分析 分类数据使用Fisher’s exact检验,连续数据使用Wilcoxon test (Mann–Whitney test)检验, log-rank检验绘制KM曲线,Cox回归分析计算hazard ratio (HR)。 R 包survival进行生存分析。 P<0.05 … WebbThe pRRophetic R package, which can be used to predict drug response from patient tumor gene expression data, using models derived from cancer cell lines. Hosted on the Open Science Framework
Webb15 aug. 2024 · 安装 pRRophetic 包,首先要安装它的依赖包 if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install(c("car", "ridge", "preprocessCore", "genefilter", "sva")) 依赖包安装成功后,从本地安装pRRophetic压缩包 从本地安装pRRophetic 包.png 安装好之后我们需要测 … metar houstonWebb,相关视频:药物敏感性之oncoPredict,药物敏感性之pRRophetic,三分钟学会药物敏感性预测分析,二十: 药物预测新思路(oncopredict),基于深度学习的药物相互作用预测方法研究,2.3 研究思路:如何预测药物作用靶点,生信还好发文章吗? how to act in middle schoolWebb20 feb. 2024 · 使用R包’pRRophetic’评估LUAD治疗中四种常见药物的化学敏感性。 HPRS高的亚群中这些药物的IC50值显著升高(图8B)。 由于ⅠB期患者的化疗效果存在争议,作者从6个数据集中提取了41例接受辅助化疗的ⅠB期患者,并根据HPRS值将患者分为三个亚群。 不同亚群之间存在总生存期的显著差异,表明HPRS可以作为指导ⅠB期患者辅助化疗的生物 … how to activate 28 day plan flowWebb21 mars 2024 · pRRophetic包是一个比较古老的R包,主要用途就是从基因表达数据预测表型(即使用癌症基因组计划CGP细胞系数据预测临床结果),预测外部细胞系(CCLE)的药物敏感性,也可用于临床数据的预测。 这个包不能在Rstudio直接安装,需要外部下载压缩包之后导进R。 metar historyWebb17 sep. 2014 · Using the pRRophetic package, this result can be achieved using a single line of R code, once the clinical gene expression data are correctly arranged. Here, we have implemented functionality that allows the user to specify different classes of cell lines from which to perform prediction. how to act goofyWebb17 sep. 2024 · pRRophetic包是一个比较古老的R包,主要用途就是从基因表达数据预测表型(即使用癌症基因组计划CGP细胞系数据预测临床结果),预测外部细胞系(CCLE)的药物敏感性,也可用于临床数据的预测。 这个包不能在Rstudio直接安装,需要外部下载压缩包 … metarichclubWebbTo view documentation for the version of this package installed in your system, start R and enter: browseVignettes("limma") PDF: Limma One Page Introduction: PDF: usersguide.pdf: PDF : Reference Manual: Text : NEWS: Details. biocViews: how to action lpa